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The interdisciplinary nature of microbiome research, coupled with the generation of complex multi-omics data, makes knowledge sharing challenging. The Strengthening the Organization and Reporting of Microbiome Studies (STORMS) guidelines provide a checklist for the reporting of study information, experimental design and analytical methods within a scientific manuscript on human microbiome research
Standard ZYMO DNA/RNA miniprep extraction protocol written in a user friendly way to reduce in-process-decisions and process time
To ensure that cities and urban ecosystems support human wellbeing and overall quality of life we need conceptual frameworks that can connect different scientific disciplines as well as research and practice. In this perspective, we explore the potential of a traits framework for understanding social-ecological patterns, dynamics, interactions, and tipping points in complex urban systems. To do so
The spread of global multistakeholder partnerships (MSPs) for the2030 Agenda for sustainable development has generatedsignificant expectations on policy synergies and transformativegovernance. This article contributes to the study of the currentgeneration of MSPs by focusing on the self-legitimation attemptsthat MSPs undertake to justify their authority. We compare theself-legitimation claims of a
Interactions between microbiomes and metabolites play crucial roles in the environment, yet how these interactions drive greenhouse gas emissions during ecosystem changes remains unclear. Here we analysed microbial and metabolite composition across a permafrost thaw gradient in Stordalen Mire, Sweden, using paired genome-resolved metagenomics and high-resolution Fourier transform ion cyclotron res
Slight modifications to the manufacturer’s protocol (Qiagen #12966-10, now discontinued and replaced with #12988-10) enabled the successful extraction of high-quality DNA and RNA from permafrost peat samples. Integrating the DNA and RNA purification steps immediately after the extraction process helped streamline the workflow, resulting in consistent quality nucleic acids suitable for downstream s
Soil microorganisms are pivotal in the global carbon cycle, but the viruses that affect them and their impact on ecosystems are less understood. In this study, we explored the diversity, dynamics, and ecology of soil viruses through 379 metagenomes collected annually from 2010 to 2017. These samples spanned the seasonally thawed active layer of a permafrost thaw gradient, which included palsa, bog
Permanent ponds represent key landscape components that support biodiversity and supply various ecosystem services. Notably, the export of aquatic subsidies to land via emerging insects, may significantly influence terrestrial food webs. Various factors, including eutrophication, can influence these exports. Polyunsaturated fatty acids (PUFA), which greatly enhance consumer fitness, are among the
The European Green Deal recognises the importance of addressing the environmental challenges posed by agriculture to meet the global biodiversity and climate agendas. Environmental policymaking is needed to drive and speed up sustainability transitions in agriculture because the environmental consequences of agricultural activities are not generally reflected in production costs and lead to market
Arctic tundra ecosystems store a significant proportion of the global soil organic carbon (C). However, warming-induced shrub encroachment and reindeer (Rangifer tarandus L.) grazing regimes promoting graminoid vegetation may strongly influence tundra soil C stability. Here, we studied how reindeer grazing intensity and experimental warming affect soil C stabilization in a tundra ecosystem. We hyp
Brazil's Atlantic Forest biome is one of the world's biodiversity hotspots, whose heterogeneous ecosystems are threatened by habitat loss and climate change. Palaeoecological research can provide essential context for the impacts of anthropogenic climate change in the 21st Century and beyond, but existing studies have notable limitations in the insights they can provide: vegetation proxy data are
In current times of global change, several sources of stress such as contaminants and high temperatures may act synergistically. The extent to which organisms persist in stressful conditions will depend on the fitness consequences of multiple simultaneously acting stressors and the genetic basis of compensatory genetic responses. Ivermectin is an antiparasitic drug used in livestock that is excret
Addressing how ecosystem services (ES) are distributed among groups of people is critical for making conservation and environmental policy-making more equitable. Here, we evaluate the distribution and equity of changes in ES benefits across demographic and socioeconomic groups in the United States (US) between 2020 and 2100. Specifically, we use land cover and population projections to model poten
Composition and functioning of arctic soil fungal communities may alter rapidly due to the ongoing trends of warmer temperatures, shifts in nutrient availability and shrub encroachment. In addition, the communities may also be intrinsically shaped by heavy grazing, which may locally induce an ecosystem change that couples with increased soil temperature and nutrients and where shrub encroachment i
Premise of research. Geochemical fingerprinting of fossil plants is a relatively new research field complementing morphological analyses and providing information for paleoenvironmental interpretations. Ginkgoales contains a single extant species but was diverse through the Mesozoic and is an excellent target for biochemical analyses. Methodology. Cuticles derived from fresh and fallen autumn leav
Karst is a widespread ecosystem with properties that affect the microbial activity and storage and cycling of soil organic carbon. The mechanisms underlying microbial resource availability in karst, which limit the microbial growth and activity in soil aggregates, remain largely unknown. We assessed the microbial resource limitations using exoenzymatic stoichiometry and key extracellular enzyme ac
To maintain food security under global change, we need to consider the stability of ecosystem functioning into the future, particularly in resource production landscapes such as agricultural pasture. With ongoing climate change, extreme climatic events are predicted to become more frequent and severe globally, impacting crop production. The whole process of farming will become more uncertain, from
The uptake of diversified farming systems is constrained by a scarcity of evidence regarding financial costs, benefits, and risks. Here, we evaluate the productivity and projected farm income of an agroforestry system, where apples are integrated with arable crops, by combining primary data with ecosystem service and cost-benefit models. Our ecosystem service assessments included: 1) weed and pest
Knowledge remains limited on how the structure of microbial community in paddy soils changes in relation to different types of fertilizers with same amount of nutrients. Thus, here, soil samples were collected at 0–10, 10–20, 20–30, and 30–40 cm depths from a paddy field subjected to four long-term fertilization treatments (no fertilization, mineral fertilization, mineral fertilization combined wi
